rs49192323 SNP Detail

Summary

• ID
  rs49192323
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128677234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACCCAGC GCCTTTTACA
  CAGTAGGTTC GCTTTCTATG ATGGACCTTT CTATGATGGT CCGTAAGGTT AGTGAGTGTT
  CTGATGTATA TTTTTCTGAT TCTCATTAGC TTGAGCATCT GCACCTGCAT TTTGACTCAC
  TTTCTTGTTT GTACTCTTTA AGATCATGGC TCCGGGATCG TTTTCGTCTT CATGTTTTCT
  Y
  TGCAGCTCTC AGAACACAGC AGGTGTTGAG GAATGATTTA AGGAAAGGTC AGAGTGGCTC
  TTCCTCGAGC TTCCAGATTT CAAGGCCTTT TTTTCTGTAC ACATCCCTAG GACTCTGTAT
  TGACCCACCC AGAACACATG TATCAAATCA CTGCCTGGTG CCAATTTCCC CACACAGTGT
  GCTCTCTTGA AAAAGACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60795872	NES16470131	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49192323					SNP	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60795872	NES16470131	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128677234 () rs orientation: forward

Symbol	Name	Function Class
Gm29599	predicted gene 29599	1429 bp upstream
Gm70593	predicted gene, 70593	within coordinates
Gm70801	predicted gene, 70801	1951 bp upstream
Tssr8546	transcription start site region 8546	1797 bp downstream
Tssr13487	transcription start site region 13487	1946 bp upstream