rs49192376 SNP Detail

Summary

• ID
  rs49192376
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54688126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC CCTGAAGCAC AAACTAGCTC
  Y
  TATAGCCATG TGGTAAGGTC TTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62404896	NES17242328	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	T	C	C	T	T	C	C
ss139563010	ENSMUSSNP6771578	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49192376					SNP	C	C	C	C	C	C	C	C	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62404896	NES17242328	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54688126 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6457	CpG island 6457	1125 bp distal
Gm24424	predicted gene, 24424	605 bp upstream
Rr289213	regulatory region 289213	1726 bp distal
Rr289214	regulatory region 289214	926 bp distal
Rr297196	regulatory region 297196	1125 bp distal
Rr389675	regulatory region 389675	1477 bp upstream
Rr404097	regulatory region 404097	1295 bp downstream