rs49192883 SNP Detail

Summary

• ID
  rs49192883
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:59997610 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAGCGAG GCAGGAGCTA
  ACACGGGAGT ACGAGCCACA AAGAGCACAG GACATATTTG TTTGCTATGT GGTACTTTGT
  TCACCGTAAA TGCCTCTTGA GCTTCCATCA GAATCTAAAG CATGTTTTCG TGTGTATTTG
  CTGCGTGTGT GCATGAAAAT ACAGGTTTGC ACACTGCCTG GCTCCTGGCT GCTACTTAGA
  R
  GAGAACCTTG GATGTTGATC TTTGCTTCCC ACCTCGTTGG AGACAAGGTC TTTTGTTTAC
  AGCTGCATAT ACCAGGCTAG CTGGCCTGTG AGTTTTGGGG GACGCTCCTA CCTCTGCCTC
  CTACCTCACC ATAGGTATGC TGGGTGATTA TACCACATCT AGCTTTGCCC AGCCTCTGGG
  GGTTTGAATT CTTGTCCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss136530841	ENSMUSSNP6777801	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49192883					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:59997610 () rs orientation: forward

Symbol	Name	Function Class
Rr196116	regulatory region 196116	1810 bp distal
Rr204367	regulatory region 204367	1853 bp distal
Rr209877	regulatory region 209877	within coordinates
Rr209878	regulatory region 209878	1791 bp proximal
Thsd4	thrombospondin, type I, domain containing 4	within coordinates