rs49193125 SNP Detail

Summary

• ID
  rs49193125
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50319961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTCACAC ATCACATGTT
  TGTACACTCG TGCCAAGGAA TTCAAAGATA CATCTCTATG CTGTGCTCAC AACTCACCAC
  TCAGCATCTG TGTATCAAAA CCACCTTGCC CTTTTAAGTA TTCACCATTT GTACAAAATA
  CAGCCATCAC CTTCCCCAAG GTTCAACATC GCAATGCCAT GGTAAAGAAC TTAGCCAGAC
  R
  TGAGGAACGC AGAGAACACA GGGTACCATT TTTGTCTAGG CAGTGTGTTT CCAATCCTGT
  ATCGAGATCA CCAGAACAAA GGTGCCATGC TCCTACATGG AGAATGTTCT AAGGTCATCA
  GAAACACAGT CTAGATCCAA CACAGAGCTT AGCAAGTTTG TAAAATATAT CTGGAGCACA
  GATCAAAGGA CAGTTGTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135158368	ENSMUSSNP6151913	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49193125					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50319961 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	900 bp downstream
Tssr33102	transcription start site region 33102	921 bp downstream
Tssr33103	transcription start site region 33103	1005 bp downstream
Tssr33104	transcription start site region 33104	1017 bp downstream
Tssr33105	transcription start site region 33105	1078 bp downstream
Tssr33106	transcription start site region 33106	1122 bp downstream
Tssr33107	transcription start site region 33107	1147 bp downstream
Tssr33108	transcription start site region 33108	1211 bp downstream
Tssr33109	transcription start site region 33109	1276 bp downstream
Tssr33110	transcription start site region 33110	1330 bp downstream
Tssr33111	transcription start site region 33111	1363 bp downstream
Tssr33112	transcription start site region 33112	1402 bp downstream
Tssr33113	transcription start site region 33113	1448 bp downstream
Tssr33114	transcription start site region 33114	1472 bp downstream
Tssr33115	transcription start site region 33115	1531 bp downstream
Tssr33116	transcription start site region 33116	1936 bp downstream