rs49193238 SNP Detail

Summary

• ID
  rs49193238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24360539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATTGCTC ATTTCCTTGC
  TTAGTTTTGA ACCCTTGGTC TCTGAGCAGA AGGGACAGTG TTATTTCCTG ACTCCTCAGT
  GATGTTGTTT CTTGCTGCTG CTATTGGGAC AGAATCCTCT GTGGACCATG ATGGCCTTGG
  AAATAACTAT TAACTATCCC CTGTTTAGTC TCCTGAGTGT TGAGATAACA CACCTCACCA
  Y
  TCAGCAATAT CATTATTGCT TAGAATGAAG GATACTATGT ACAGCAAATG ATGGTCTTGC
  TTGAAACTGT CTACCAAGGC CGGAGAGAGG GCTCAGCAGG TAAAGGCGTT TGCCACCAAG
  CCTGACACGC TGATTTTGAC TCTTAGAGTC CACATAGTGG AAGGAGAAGC CACTCCGGCA
  AGCTGTCCTC TGACTTCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
ss60982569	NES16150673	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	WSB/EiJ
rs49193238					SNP	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982569	NES16150673	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24360539 () rs orientation: forward

Symbol	Name	Function Class
Gm4598	predicted gene 4598	180 bp upstream