rs49193729 SNP Detail

Summary

• ID
  rs49193729
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77542882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTCCTT CTATGGGGCT
  GCAAACCCCT TCAGCTCCTT GGATCCTTTC TCTAGCTCCT CCATTGTTAA CCCTGGGCTA
  CATACATTTT AATTATATTT TCTTGCTACA CAATGGTCCC AAAAGTCTGG CTTCTGGGAG
  CCTCTCCACA TCTTTAAATT CTCTCTTCGA GATTTTTCTC TCTTGTCCTC AGTATCCAGG
  M
  CTCTTCACAG TTGTAGCATT TAAGAATGAA GAAAGGGGGC TGGTAGGATG GCTCAGCGGG
  TAAGAGCACT GACTGCTCTT CTGAAGGTCC TGAGTTCAAA TCCCACAACC ACATGGTGGC
  TTACAACCAT CCATAATGAG ATCTGACGCC CTCTTCTGGT GTGTCTAAAG ACAGCTACAG
  TGTACTTAAA TAAAAAAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61429417	NES16808732	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49193729					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61429417	NES16808732	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77542882 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	within coordinates
Klhl31	kelch-like 31	1132 bp upstream
Rr683389	regulatory region 683389	410 bp proximal
Rr683390	regulatory region 683390	911 bp proximal
Rr683391	regulatory region 683391	1217 bp proximal
Rr683392	regulatory region 683392	1814 bp proximal
Tssr86194	transcription start site region 86194	869 bp upstream
Tssr86195	transcription start site region 86195	894 bp upstream
Tssr86196	transcription start site region 86196	936 bp upstream
Tssr86197	transcription start site region 86197	975 bp upstream
Tssr86198	transcription start site region 86198	1019 bp upstream
Tssr86199	transcription start site region 86199	1021 bp upstream
Tssr86200	transcription start site region 86200	1036 bp upstream
Tssr86201	transcription start site region 86201	1113 bp upstream