rs49194096 SNP Detail

Summary

• ID
  rs49194096
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129914299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAC CGAGGTTCTC CAGCACACAC
  W
  GAGGCATAAA TACACTGGCC ATCCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss144477288	ENSMUSSNP4812445	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss321692395	CHEV_5_130361329	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49194096					SNP	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129914299 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	1509 bp proximal
Rr399383	regulatory region 399383	1750 bp upstream
Rr621372	regulatory region 621372	747 bp proximal
Tssr53498	transcription start site region 53498	1681 bp downstream
Tssr53499	transcription start site region 53499	1830 bp downstream
Tssr53500	transcription start site region 53500	1958 bp downstream
Tssr53501	transcription start site region 53501	1984 bp downstream