rs49194253 SNP Detail

Summary

• ID
  rs49194253
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117160844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACAC AATATGTGGG CTAGGCAAAT
  T
  ACCTAAGTCC TTGCTCTGAC TAAAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146924558	ENSMUSSNP862849	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss324842586	CHEV_14_117322654	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49194253					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117160844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6842	CpG island 6842	1737 bp proximal
Gpc6	glypican 6	1883 bp upstream
Rr497535	regulatory region 497535	1508 bp proximal
Tssr127141	transcription start site region 127141	1773 bp upstream
Tssr127142	transcription start site region 127142	1827 bp upstream
Tssr127143	transcription start site region 127143	1859 bp upstream
Tssr127144	transcription start site region 127144	1947 bp upstream