rs49194397 SNP Detail

Summary

• ID
  rs49194397
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25113731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAAAGCT GATAATGCCC
  ACAGTCAACA TTAAAGACGA TTGTGCCAGC CAGCTCACGA GGGAGGGGAG CGTTTATTTC
  TGAAACTTGC ACTCTTAGAG GTGTTATTTC ATGGCCTGTC TGCCCTGTCA TTTTTGAGCC
  TGTGCTGAGA TACATCATGG AGAGAGTGCA TAGTGGAGGA AACTGCTCAC TTCTCGCATC
  Y
  AGGAAGCAAA GAAGATAGCA AGAACCATAA ACCTAATAGT TCATTTAAGG GTGTATACGC
  CACCATGACA TAACTGTTTT CTACTGAACT CTGTCTCCTA AAGGTTCTTC TGATCTCCCA
  CAGACTGGCT ACCCAGCCTT TACCTCATGG GCCTTTGGGA AGCACTGAAG ATCTAAATTA
  TAACAATCTT GGAACATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60980605	NES16142449	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49194397					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60980605	NES16142449	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25113731 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	1420 bp upstream
Tssr2143	transcription start site region 2143	1504 bp upstream
Tssr2144	transcription start site region 2144	1356 bp upstream
Tssr2145	transcription start site region 2145	1332 bp upstream
Tssr2146	transcription start site region 2146	1319 bp upstream
Tssr2147	transcription start site region 2147	1274 bp upstream
Tssr71243	transcription start site region 71243	1490 bp upstream
Tssr71244	transcription start site region 71244	1465 bp upstream
Tssr71245	transcription start site region 71245	1450 bp upstream
Tssr71246	transcription start site region 71246	1421 bp upstream
Tssr71247	transcription start site region 71247	1393 bp upstream