rs49195503 SNP Detail

Summary

• ID
  rs49195503
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:88115375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTCAAAG TCAGAACATC
  AAAGATTTAG AGGTCAGTCC ATCAAATAGG TATTCCTAGA ACTCAGAAAC TCTGGAAGTT
  CAGAGTTTGA GATGTAAGAC TTGACCCTAG TAATACGAAC CTTATACTTG TTCCCAGAAA
  CAGAAAGTAT GGGCCATGGT CTGCTCAGCT CCCCACCTCT CATTTCCCTA CCTCACATTG
  Y
  CTGGCTCTCT CTGAGTTTCT AGGCCCAGGA TGAATGTGGC AGCGGAAGTT GAACTTGTCC
  ATTAAGGTCC TCCTAACATT CTTTCAATAT CCCTACTGCA TTGTTGAAGT ATGGTATTTT
  GAGGAGCCTG AGTCCGTGTC TCTGAACTGT CCAGAGTAAC CTATCTCCTC TGGAAAAGCT
  ATGCTTTCTG ACCAACGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
ss61194223	NES16700734	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	NZW/LacJ	PWD/PhJ
rs49195503					SNP	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194223	NES16700734	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:88115375 () rs orientation: forward

Symbol	Name	Function Class
1700066N21Rik	RIKEN cDNA 1700066N21 gene	within coordinates
2310003L06Rik	RIKEN cDNA 2310003L06 gene	1943 bp upstream
BC051076	cDNA sequence BC051076	1164 bp downstream
Rr378253	regulatory region 378253	1463 bp upstream
Tssr46962	transcription start site region 46962	1939 bp upstream