rs49195875 SNP Detail

Summary

• ID
  rs49195875
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153062356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AACCAGGCTG AGGGGCCCAA CAGGATCGAT CCTCTTCACT
  CTCAGGGTAA CTTTTATTCT GAGATACAGC ACGTATACAT ACCTCTGATT TTACTCACTT
  T
  TAAGCACACA CACACACACA CACACACACA CACACACACA CACACACACC AGGGTGACCC
  AAAGGTTGCT CTCCTGGGTC TATCTACCCC CTTAACCTTG A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss145737877	ENSMUSSNP5191633	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs49195875					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153062356 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	143 bp distal
Lamc2	laminin, gamma 2	163 bp upstream
Rr13130	regulatory region 13130	645 bp proximal
Rr25076	regulatory region 25076	1636 bp proximal
Rr28719	regulatory region 28719	within coordinates
Tssr14250	transcription start site region 14250	554 bp upstream
Tssr14251	transcription start site region 14251	518 bp upstream
Tssr14252	transcription start site region 14252	488 bp upstream
Tssr14253	transcription start site region 14253	474 bp upstream
Tssr14254	transcription start site region 14254	455 bp upstream