rs49196087 SNP Detail

Summary

• ID
  rs49196087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142679310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGTCCCC GAAAGCCAGA
  ATTCACAGGA ATACAGAACT ACAGTGAGCA GCAGGAAGTG ATACGGCCAA GCGTTCCAGG
  GTCAGCAACA AGGCTAGTGC CCCCTAAGGT GTTCCCCCCC CCCTCAACCC TGCCATCCTC
  ACCCACAGCA GCCAGTAATG AAGAGTTATT TCCAACTAAA AGCCCTTGGA GCTGAGCCAG
  R
  CAGCTCCAGG ATGCTGAGCC GGCCTCCAGC AGTGGCCCGC GGCCCTAGCC GCCCTTAAGA
  GTCCTTATCC ACCTCACTAG GTTGAGTCTC AGTCTTAGGA AGAAGCTGAT GTGAGGTTAG
  GGGACACAAC TGTCTGATTG CCAGGCCTAG TAGTCTTGGG GGGGGGGTGG GCTCAAGGGA
  TCTCTGGACT AATAGATTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60850509	NES16004458	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49196087					SNP	A	A	A	A	A	A	G	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60850509	NES16004458	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142679310 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16953	CpG island 16953	1018 bp distal
Gm40352	predicted gene, 40352	351 bp upstream
Rr127813	regulatory region 127813	within coordinates
Slc29a4	solute carrier family 29 (nucleoside transporters), member 4	within coordinates
Tssr49584	transcription start site region 49584	1074 bp downstream
Tssr49585	transcription start site region 49585	1053 bp downstream
Tssr49586	transcription start site region 49586	543 bp upstream