rs49197217 SNP Detail

Summary

• ID
  rs49197217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72892050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAACGA GGGGTTAGGG
  ATCTACCTCC TTTGTAGAGG GCTTTCTTAG CTTGTGTGAG GCTTGAGGTT CAATCCCTAG
  TTACAGCAAC ACAAATATCA GATCTAAATG TGAACTAGCT TTTGCCCAAC ATCAGCTTGT
  TGAATGGTTT CCTTTACTGT TTACTCACTA GACAGGTAGG GGACAGAGGA ACGGTAACTT
  Y
  CCTCTGGGGT GAGTGCACTC CTATTCACCC TCTTCCATCC TTTTAGACTA GGCATACTCT
  AAGTGACAAA AACATGAAGG TTCTAGGGCT GGGAGGTGTA GTTCAGTAGA ACAGAGATTA
  CCTACCATGC ACAAGTCCCT GAGTTCGATC CCCACGACTG CAAATAGATA ATGCAAAACA
  AAAACCATCC TGGACAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61420832	NES16804901	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49197217					SNP	C	C	C	C	C	C	T	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61420832	NES16804901	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72892050 () rs orientation: forward

Symbol	Name	Function Class
Ccpg1	cell cycle progression 1	661 bp upstream
Cpgi22024	CpG island 22024	306 bp proximal
Gm44503	predicted readthrough transcript (NMD candidate), 44503	within coordinates
Pierce2	piercer of microtubule wall 2	within coordinates
Rr401512	regulatory region 401512	553 bp upstream
Rr682883	regulatory region 682883	1538 bp distal
Rr682884	regulatory region 682884	within coordinates
Rr682885	regulatory region 682885	591 bp proximal
Rr682886	regulatory region 682886	848 bp proximal
Rr682887	regulatory region 682887	1012 bp proximal
Tssr2935	transcription start site region 2935	530 bp downstream
Tssr86066	transcription start site region 86066	623 bp upstream
Tssr86067	transcription start site region 86067	642 bp upstream
Tssr86068	transcription start site region 86068	759 bp upstream
Tssr86069	transcription start site region 86069	800 bp upstream
Tssr90501	transcription start site region 90501	515 bp downstream
Tssr90502	transcription start site region 90502	569 bp downstream
Tssr90503	transcription start site region 90503	576 bp downstream