rs49197679 SNP Detail

Summary

• ID
  rs49197679
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29147103 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGGACCA GACTCTAGAA
  ATTTCCAGAA CCCAGAAAAT TTTTGTGTCT GACATACACG CATACACACA CACACACACA
  CACACACACA CACACACACA CATAAATAAA TAAGGAACGT GCCTGCCTGC TCAGCTGTCA
  GGGATATGAA TTATTACCCA TGTCTTGGTC ACCCATGAGG ACAATGACAA CAATCACCTA
  Y
  CGAGGTCACA TGGGGTTGTC ACGAGCTGCT GTGACACCGT TCATTTAAAG AGCATTGTCC
  GGCATCAAGA TGCTTTCCAA GATAAACAGT CTAGCCAATG CTTGTAAATG CCTGGCAGGA
  GCCCAGCGCA CAGAGGACAC AGCCAATGGC GGTGTGGCAG GTGTCTGCTC CCCTAACTTG
  TTACAGCAGG AAACATGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60559617	NES16576393	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49197679					SNP	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559617	NES16576393	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29147103 () rs orientation: forward

Symbol	Name	Function Class
Gm16191	predicted gene 16191	within coordinates
Rr392487	regulatory region 392487	1947 bp upstream
Rr524713	regulatory region 524713	437 bp distal
Rr524714	regulatory region 524714	1516 bp distal
Rr524715	regulatory region 524715	637 bp distal
Rr524716	regulatory region 524716	1999 bp proximal