rs49198338 SNP Detail

Summary

• ID
  rs49198338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89816635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCAGGA AACTGCCCTG
  CAGCTTCCAC ATCTTAGAGA TCTAGACACT TGCTGGGTGT GGGCGTCAGC TTGCTCTTTA
  AATTATAAAA TAGTTACTGA AGTAGTTTTT GAGACAGGCT TTCTCTGGGT AGCCTTGGGT
  GTCCTGAAAC TCACTCTGTC AACCAGACTG GCCTTAAACC CAGAGATCTG CCTGCCTCTG
  Y
  CCACTGTGCC ACCATCTGGC CTGCAGTGGA AATCTTAAAA ATATAGACAT ATACAAGGTG
  AATAAAAAAT GAAATAAAGT CTTTTTCTAT AAACTTTCTT TCAATCATGG AGAGTTGATG
  GTTTTACCAA ACTAACTTCT ACAGATTTCA TGTTACATAT GTAGACAGTC TGTACAAGAT
  TGCAGTAGAG AGGTTCGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss61031646	NES16093335	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs49198338					SNP	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031646	NES16093335	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89816635 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67723	transcription start site region 67723	1879 bp downstream
Tssr67724	transcription start site region 67724	1361 bp downstream
Tssr67725	transcription start site region 67725	1319 bp downstream
Tssr67726	transcription start site region 67726	1304 bp downstream
Tssr67727	transcription start site region 67727	1240 bp downstream
Tssr67728	transcription start site region 67728	874 bp upstream
Tssr67729	transcription start site region 67729	1023 bp upstream