rs49198643 SNP Detail

Summary

• ID
  rs49198643
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133867052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACTTCTGGC TCCCCCACGC CTCACTCCCT ACTCAGGTTC
  CTCCCCTTGA TCACTTCTTT ACTCCTTATT ATCCTCACAT TTAACCCATA TTTGAAAGGT
  C
  TTACTTACTG AACTTTCCCC TATGTCCAAA CAAAATAGCC GGTGTAAGCT TGTCCCTGGT
  ATGTCTGAAA AACAGAAGAC CCTCTAGATG CAGTGGAGA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134469291	ENSMUSSNP1671715	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49198643					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133867052 () rs orientation: forward

Symbol	Name	Function Class
Nxf2	nuclear RNA export factor 2	1549 bp upstream
Tssr164159	transcription start site region 164159	1577 bp upstream
Tssr164160	transcription start site region 164160	1536 bp upstream