rs49198665 SNP Detail

Summary

• ID
  rs49198665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123621609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTAGAT TGTTACCAGC
  TGTGATCCCA GGTGTGGTTA ATGGTGTCAC TTTGGATGAA AAGGCTGAGT CTTGTACCTT
  GTTCTTAGGG GCTCTGGGAC CTGAGAGTAA CGGCTGCATG GAGCCAAGCG CACTGTGGAG
  CCCAAGGCCT CTGCCAAAGC TGCAGAACTG CTGAGCTGGG GGCACAGCTG ATTTTCTTTC
  Y
  TTTGCTTCTA ATTTTTTAAT ATTTAAAATT TTGTGGATGA GTGTGCGTGT TCATGTTTAA
  TGAGATAGGT GAGGAGGAGT AGTGTTTCCT GTGGATGATG AAGAGCTAAT TAGAGTTCAG
  GTACTGATGC TATGGGAAAT CGCTTCCATC GTAGATCACA GGCCGGTCAA CAGTCAGGTG
  GTAAAGCACT TTTTTGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137081807	ENSMUSSNP6610428	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss323234333	CHEV_9_123701662	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49198665					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123621609 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	478 bp upstream
Tssr92158	transcription start site region 92158	472 bp upstream
Tssr92159	transcription start site region 92159	448 bp upstream
Tssr92160	transcription start site region 92160	73 bp upstream
Tssr92161	transcription start site region 92161	52 bp upstream