rs49200635 SNP Detail

Summary

• ID
  rs49200635
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:128060913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGAAGT ATGACAATAC
  CTGTAATTTA AATCAATCAA AAAAATTAAA AACCAGACAA CACTATTTTA ACCAAAGTAC
  ATTTGTAAAA AATTTGAGCA CCTCTTATTT TTCAGAGTGA ACTAAGCGCA GGAAAGGTTA
  AGTCCTAGGA AGCTGTACAG TCCTTATACT TAAAAACATA ACAAAACCAC CTCAACTTCC
  Y
  ATGGAGAAAA GTGGGAAAAG GAAGGTATAT GAACACATAC TGACACACAG GAACAACAGA
  GCTAAGATGT TTATTCACTC ATGTGTATAC ATCACAGTTT TAGGTAACCA AACATAGACA
  CCTGAAATGT CTTTCAGAAA AAAAGACAAG AGATCTGAGA TGATAAATGT ATGAAATATT
  AAAATTTAGC TCTGGTCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61060901	NES16065826	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C	C	C	T	C	T	C
ss145891467	ENSMUSSNP2394594	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49200635					SNP	T	T	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61060901	NES16065826	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128060913 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19791	CpG island 19791			1097 bp proximal
Rr656040	regulatory region 656040			658 bp proximal
Rr656041	regulatory region 656041			1273 bp proximal
Tial1	Tia1 cytotoxic granule-associated RNA binding protein-like 1			Intron
				Noncoding-Transcript-Variant
Tssr75109	transcription start site region 75109			533 bp downstream
Tssr75110	transcription start site region 75110			1979 bp downstream