rs49201027 SNP Detail

Summary

• ID
  rs49201027
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95900151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGTGACA GTCCATAAAG
  GGAGAGGCAC AGTGCTCTGC TGTGTGCTGG AGACACTGTG GAAGAAAACA GGCCTCAAAG
  ATCTTTCTGA GTTCAGGATT TCTGGGCAGA ACAAGGATTC AGGACAGAAG GTGAATGAGA
  GGGTTTGGTT TAGAGGCACA GAACTCACTG GGTGCCAGAG CTTGTTAAAG TCACCTTTGT
  Y
  GAAACCTTTG CCAATTCCCA TCAGAGCCAG AGACAGGGAA AAGGCCAAAT CCTTTTGTAA
  GGGTAGAATT AGTCCTGCTG ACATTAAAGA AAAAGACTTA AGGCTTATGA GCTGGGCAAT
  TCTTATAGAG GCTGTGCCTT GAGGGGTACA GTCTAAAGTA CTACAGTCAG CGAGCGCAGC
  TGACTCTGTG CAGAGCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144993647	ENSMUSSNP1090100	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49201027					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95900151 () rs orientation: forward

Symbol	Name	Function Class
Gm32702	predicted gene, 32702	1445 bp upstream
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr484141	regulatory region 484141	154 bp proximal
Rr484142	regulatory region 484142	1043 bp proximal
Rr484143	regulatory region 484143	1459 bp proximal
Tssr120725	transcription start site region 120725	1478 bp upstream
Tssr120726	transcription start site region 120726	1682 bp upstream