rs49202427 SNP Detail

Summary

• ID
  rs49202427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:39302448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGTTCCC AACTACTGTA
  CTAAATTTTA TCCTCATAAA CTTATGGCTG TGTCAGGCAC ATAAGGCCTT AACTTTTCTA
  TTTGACTTTC TGATTCCACA TAAGTAAGGC GTCACAAGTG TGTTTTCTGT GAGATGACTT
  TCCAATACCT AGAAAATTTT TGAAGTGGCC ATTCTGAAAT CCAAGGTTTG TGTGAAATAA
  Y
  AGTTACATTA GCTTCTGTAT CCACCACATC TTCTATTTAA GTATCATAGC AAATTTAATT
  TTGGAGTCTG ATGATTAACA TCTGTTTTCA AGGACATATA TTTTCCTGAA TTTCAAAATT
  CTTCTGATCT TTCAACTGGA ACGGCTTTAT CTCTGATATA GGGAAACAGA AACAGTTGAG
  CAATTCCATC ACCAGTGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60312168	NES15803712	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49202427					SNP	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60312168	NES15803712	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:39302448 () rs orientation: forward

Symbol	Name	Function Class
Cyp2c29	cytochrome P450, family 2, subfamily c, polypeptide 29	within coordinates
Tssr156337	transcription start site region 156337	1476 bp upstream
Tssr156338	transcription start site region 156338	1510 bp upstream
Tssr156339	transcription start site region 156339	1535 bp upstream
Tssr156340	transcription start site region 156340	1635 bp upstream
Tssr156341	transcription start site region 156341	1684 bp upstream