rs49202431 SNP Detail

Summary

• ID
  rs49202431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81017511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTTTCC TCGAAGTGTC
  CTGAGCAAGT GGTGGGTGGC ATCTACGGTG TCCTGAACAG GAAGCGTGGC CATGTGTTTG
  AGGAGTCCCA GGTGGCTGGT ACCCCCATGT TTGTGGTCAA GGCATACCTG CCTGTCAATG
  AGTCCTTTGG TGAGTGTCTG GTCCCTGGGG TTTGCAGATA ACCTGCAAGG CCTGTGTAAT
  R
  TAGCTGCGGG GTGCAGAACA GAAGCAGATT TCTGTCATCA CGGCCAGCTT GCTTAAGGGT
  GCCAGGAAAG ACAGAGCTAC AAACTACACA GAGAAACCAA AACAAAGGAC CCAGGAATCC
  CTCCTGGGAG GGGTGGCAAG ACAGCTAAGC ATGTCCCCCC CCCACCCCAC CCCCCCAGGG
  AAGTCACCTG AGTCTCCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388439	NES15267111	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49202431					SNP	A	A	A	A	A	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388439	NES15267111	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81017511 () rs orientation: forward

Symbol	Name	Function Class
4930442H23Rik	RIKEN cDNA 4930442H23 gene	928 bp downstream
Cpgi1951	CpG island 1951	870 bp proximal
Dapk3	death-associated protein kinase 3	1328 bp upstream
Eef2	eukaryotic translation elongation factor 2	within coordinates
Rr435545	regulatory region 435545	1981 bp distal
Rr435546	regulatory region 435546	1489 bp distal
Rr435547	regulatory region 435547	838 bp proximal
Rr435548	regulatory region 435548	1751 bp proximal
Tssr3283	transcription start site region 3283	750 bp upstream
Tssr94705	transcription start site region 94705	1938 bp downstream
Tssr94706	transcription start site region 94706	1770 bp downstream
Tssr94707	transcription start site region 94707	1715 bp downstream
Tssr94708	transcription start site region 94708	1659 bp downstream
Tssr94709	transcription start site region 94709	1401 bp downstream
Tssr94710	transcription start site region 94710	723 bp upstream
Tssr94711	transcription start site region 94711	1323 bp upstream
Tssr94712	transcription start site region 94712	1379 bp upstream
Tssr94713	transcription start site region 94713	1545 bp upstream
Tssr94714	transcription start site region 94714	1607 bp upstream
Tssr98571	transcription start site region 98571	1898 bp upstream