rs49202552 SNP Detail

Summary

• ID
  rs49202552
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18911188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAACTCTT TCTGCCCCCT
  ACCTCCTCAG CCCCTTCCCC GGGACCCTTC CCTGTCTTTG GGCATAGCAG GGGGAAATGC
  TGAATTGAGG GCTGGGCTTG GGAATAGTAA AACAGCAGAA GACTTTCTGT ACACTGCACT
  GTCTTCAGCT TTGCCTCTGC CCCCTCTCCC CACCCCAGGT AGAATCCTCT TCTCCCCTAG
  R
  CAAATGTGTA TGGCGCCAGT AGGGCCATTT TAGTACGAGG GGAGCTGGGC TGGAGGAGTG
  GAGAGGTAAA GAGACGCGGA GAGTGGACAC TGGTCTCTAG GCCAGGAAAA CGTCCAGGAG
  GAAGCCAAGA GCTTGAGTCA TGGGGTGGGA CCATCAGGCC AAGCAAGGCC TCAGATGAAA
  GCTGACGACC GTTCAGGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148469586	ENSMUSSNP1098920	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49202552					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18911188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	453 bp distal
Cpgi18451	CpG island 18451	862 bp proximal
Cpgi18452	CpG island 18452	1694 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Gm71808	predicted gene, 71808	652 bp upstream
Rr155272	regulatory region 155272	1013 bp proximal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	823 bp downstream
Tssr64791	transcription start site region 64791	789 bp downstream
Tssr64792	transcription start site region 64792	751 bp downstream
Tssr64793	transcription start site region 64793	726 bp downstream
Tssr64794	transcription start site region 64794	570 bp downstream
Tssr64795	transcription start site region 64795	940 bp upstream
Tssr64796	transcription start site region 64796	1718 bp upstream