rs49203657 SNP Detail

Summary

• ID
  rs49203657
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:21296361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCAATT CCTCATTGAA
  GGCGCTCCCT TGGCTTAATA TTTAGAAATG TCTTATTAGT ATACTCATCA ACACGAAAAT
  GTATCAAAGA GCCAGATTTC TTTTCTGATT TCAATTACAT ACCTGTGGTC TTAAACCTCT
  CTTTTGCTTT GGGGTATATT TTCCTACCTT ACAGCCACTT TCTTCTGCTT ATAACTGGCA
  R
  CTAAGTTAGC CTAGGATACG GTTTATGGTG CTTTGTTTTC TTTCCCAGAA TCTTCAACGC
  CTTTAAACCG AGTAACCTTA TCTTTGCCTT TATTCAATGG TCGGCCTGCG TTTCAACTTC
  CCTTTCCTCC CTTATCTCAA GCTATTCTCT GAAAAAGCCC TACTCAGGTT AAATCGCTCT
  TCCGGGTGGC CCTTCAAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52168192	NES15221835	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49203657					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52168192	NES15221835	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:21296361 () rs orientation: forward

Symbol	Name	Function Class
1700021A07Rik	RIKEN cDNA 1700021A07 gene	within coordinates
Cpgi1360	CpG island 1360	920 bp distal
Rr214085	regulatory region 214085	440 bp proximal
Rr224569	regulatory region 224569	960 bp distal
Rr368955	regulatory region 368955	1070 bp downstream
Tssr92636	transcription start site region 92636	1002 bp downstream
Tssr92637	transcription start site region 92637	981 bp downstream