rs49204180 SNP Detail

Summary

• ID
  rs49204180
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72322737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCCACAT CTTCGAGGCA
  GGGTTTCTTT GTGAAACCTC GACTGACTTG GACCTCGATC TGTAGACCAG GCTAGCCTGA
  AACTCACAGA GATCCACCTG TCTCTGCCTC TTGAGTGCTG GAATTAAAGT CATATGTCAC
  CACCACCTGG GAACAGTTTG CTTTGGGTTA AGAGTAAACC CAAAACCCGG ACATGGTGGC
  R
  CACGCCTTTA ATCCCAGCAC TCGGGAGGCA GAGGCAGGCG GATTTCTGAG TTCGAGGCCA
  GCTGGTCTAC AAAGTGAATT CCAGGACAGC CTGGGCTAAT AAAAAGAAAC CCTGTCTAGA
  AAAAAACAAA AAAAACAAAA CAAAATAACA AAAAAAAGTA AACCCAAAGA AGATGCACAT
  TCTCACATAT TTAAATATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144651924	ENSMUSSNP2038710	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49204180					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72322737 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	458 bp proximal
Pecr	peroxisomal trans-2-enoyl-CoA reductase	within coordinates
Rr412794	regulatory region 412794	592 bp distal
Rr412795	regulatory region 412795	671 bp proximal
Rr412796	regulatory region 412796	802 bp proximal
Tmem169	transmembrane protein 169	817 bp upstream
Tssr114	transcription start site region 114	694 bp downstream
Tssr115	transcription start site region 115	710 bp downstream
Tssr116	transcription start site region 116	727 bp downstream
Tssr7298	transcription start site region 7298	789 bp upstream
Tssr12164	transcription start site region 12164	646 bp downstream
Tssr12165	transcription start site region 12165	670 bp downstream