rs49204357 SNP Detail

Summary

• ID
  rs49204357
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34924139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACAAATG GCTCAATGCC
  CTGGGCTCTG TTCTGATGCT GGAGGCGCTG CCACAAAGCA GGAATCTGCT GTGTGCTGTA
  GGTTGTTTGA AGAGGCAAAA GCTAAATAAG CTGTGCTTTG TCGAATAGGA ACAGTGTGAG
  AAGAAAGAAG GAAACTGGGA TGTGAGGCCG GGAGTCAGGG CTCCAGCCTG CCGTGGCTGG
  C
  AAGTGGCTGA GCTCTTTGGG ATCCCTGCGG CAGGTTTGGA CAGGAGAGAT CTCTGAGCTC
  AGCTCAGATC ACCCGAATAG AATCCCCAGG GACTGGACTG GATTAAGATC ATCAATTCAA
  TTCTGATCCC AGTAGGAGTG GAGGCCCCAG GATAGTGCAG AGAGCACAGC TCTGTCAGTG
  GGCATCGCAG AGGCAAGTTA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss149109372	ENSMUSSNP5663763	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322578207	CHEV_8_35520039	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49204357					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34924139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20247	CpG island 20247	1283 bp distal
Gm39159	predicted gene, 39159	1149 bp downstream
Gm45349	predicted gene 45349	within coordinates
Gm46038	predicted gene, 46038	within coordinates
Rr400818	regulatory region 400818	1356 bp downstream
Rr662016	regulatory region 662016	1200 bp distal