rs49204696 SNP Detail

Summary

• ID
  rs49204696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180771209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTT GCTCCGACTG GAGGAGAGGG
  Y
  CTCGGACTGT GGCTTCTGAT CCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146388108	ENSMUSSNP6900272	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320160476	CHEV_1_182873775	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49204696					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180771209 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1127	CpG island 1127	432 bp distal
Cpgi1128	CpG island 1128	21 bp distal
Rr424646	regulatory region 424646	1175 bp distal
Rr424647	regulatory region 424647	34 bp distal
Rr424648	regulatory region 424648	235 bp proximal
Rr424649	regulatory region 424649	368 bp proximal
Rr424650	regulatory region 424650	402 bp proximal
Rr424651	regulatory region 424651	971 bp proximal
Tmem63a	transmembrane protein 63a	within coordinates
Tssr324	transcription start site region 324	413 bp upstream
Tssr10503	transcription start site region 10503	1292 bp downstream
Tssr10504	transcription start site region 10504	1276 bp downstream
Tssr10505	transcription start site region 10505	1199 bp downstream
Tssr10506	transcription start site region 10506	1167 bp downstream
Tssr10507	transcription start site region 10507	1115 bp downstream