rs49204696 SNP Detail

Summary

• ID
  rs49204696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:180771209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTT GCTCCGACTG GAGGAGAGGG
  Y
  CTCGGACTGT GGCTTCTGAT CCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146388108	ENSMUSSNP6900272	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320160476	CHEV_1_182873775	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49204696					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180771209 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr424646	regulatory region 424646			1175 bp distal
Rr424647	regulatory region 424647			34 bp distal
Rr424648	regulatory region 424648			235 bp proximal
Rr424649	regulatory region 424649			368 bp proximal
Rr424650	regulatory region 424650			402 bp proximal
Rr424651	regulatory region 424651			971 bp proximal
Tmem63a	transmembrane protein 63a			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr324	transcription start site region 324			413 bp upstream
Tssr10503	transcription start site region 10503			1292 bp downstream
Tssr10504	transcription start site region 10504			1276 bp downstream
Tssr10505	transcription start site region 10505			1199 bp downstream
Tssr10506	transcription start site region 10506			1167 bp downstream
Tssr10507	transcription start site region 10507			1115 bp downstream