rs49204781 SNP Detail

Summary

• ID
  rs49204781
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:106106850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGCTTTTT GTGTAACTTC TCCAGGTGTT CTATAGTCAG
  ATTGTCAAAA AACAGAGTCA GCCACTGCAA AAAGTAGAGT TTCTTATGCG TTTCTGAATA
  G
  TCTTGGAGGA GTTCGAGAAC AGAGCGCATT AAATCATTGA GAGGAAAGGC TTTTTCCAAC
  TGCTGACGTC GAATTATTCT TTTCTCTGTT TCAATCTCA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145614906	ENSMUSSNP1001162	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs49204781					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:106106850 () rs orientation: forward

Symbol	Name	Function Class
Gm72977	predicted gene, 72977	within coordinates
Gvin-ps7	GTPase, very large interferon inducible, pseudogene 7	within coordinates
Tssr74133	transcription start site region 74133	1595 bp upstream
Tssr74134	transcription start site region 74134	1340 bp upstream
Tssr74135	transcription start site region 74135	1260 bp upstream
Tssr74136	transcription start site region 74136	1214 bp upstream
Tssr74137	transcription start site region 74137	1148 bp upstream
Tssr74138	transcription start site region 74138	1110 bp upstream
Tssr74139	transcription start site region 74139	1068 bp upstream
Tssr74140	transcription start site region 74140	1015 bp upstream
Tssr74141	transcription start site region 74141	625 bp upstream
Tssr74142	transcription start site region 74142	471 bp upstream
Tssr74143	transcription start site region 74143	1568 bp downstream
Tssr74144	transcription start site region 74144	1758 bp downstream
Tssr74145	transcription start site region 74145	1863 bp downstream