rs49205723 SNP Detail

Summary

• ID
  rs49205723
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69343325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG CACCCTGAGG CGGGAGGACG
  K
  ATGTTGGGAG GACTCAGATG CCCAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss137856846	ENSMUSSNP48145	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss324083695	CHEV_12_70397538	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49205723					SNP	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69343325 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4692	CpG island 4692	within coordinates
Klhdc2	kelch domain containing 2	130 bp upstream
Rr467019	regulatory region 467019	1959 bp distal
Rr467020	regulatory region 467020	within coordinates
Rr467021	regulatory region 467021	182 bp proximal
Tssr113629	transcription start site region 113629	559 bp downstream
Tssr113630	transcription start site region 113630	125 bp upstream
Tssr113631	transcription start site region 113631	280 bp upstream
Tssr113632	transcription start site region 113632	377 bp upstream
Tssr113633	transcription start site region 113633	387 bp upstream
Tssr113634	transcription start site region 113634	413 bp upstream
Tssr113635	transcription start site region 113635	421 bp upstream
Tssr113636	transcription start site region 113636	848 bp upstream
Tssr116496	transcription start site region 116496	683 bp downstream