rs49206340 SNP Detail

Summary

• ID
  rs49206340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137190437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAT TCGGCTCACA GTGGGCGGTT
  Y
  ATCCTTGGTA GGATAGGAAA GCAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144526848	ENSMUSSNP1004909	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321701922	CHEV_5_137634223	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49206340					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137190437 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1697	transcription start site region 1697	797 bp upstream
Tssr49319	transcription start site region 49319	633 bp downstream
Tssr49320	transcription start site region 49320	621 bp downstream
Tssr53954	transcription start site region 53954	703 bp upstream
Tssr53955	transcription start site region 53955	687 bp upstream
Tssr53956	transcription start site region 53956	668 bp upstream
Tssr53957	transcription start site region 53957	651 bp upstream
Tssr53958	transcription start site region 53958	596 bp upstream
Tssr53959	transcription start site region 53959	583 bp upstream
Tssr53960	transcription start site region 53960	517 bp upstream
Tssr53961	transcription start site region 53961	418 bp upstream
Tssr53962	transcription start site region 53962	400 bp upstream
Tssr53963	transcription start site region 53963	361 bp upstream
Tssr53964	transcription start site region 53964	321 bp upstream
Tssr53965	transcription start site region 53965	296 bp upstream
Tssr53966	transcription start site region 53966	563 bp downstream
Tssr53967	transcription start site region 53967	589 bp downstream