rs49207641 SNP Detail

Summary

• ID
  rs49207641
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89845355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAAAATG ACTTAAATGT
  TAATGTTAGC TTCAAGCTAT TTTGTTACAA GTAGTGAGGT GATACCACCT TAGTACTGTG
  GAATTGAATA ATTGAGTTAA TTAGGGGTAA ATTTAGTGTG GTATAGGCCA GAATGATTTT
  CCTCTGACAG TGACTGTTGG AGTACAAAAC CAGTCTTTGA ACCATTCACC ATTCCCACAA
  Y
  GTATATTCTG TTACCATCAG TGACATGAGG TTGATCTCTG AACTCCACAC TTGTATTTGC
  ACCTACCTAT ACATACACAT GTATGTATAC ACACATACAA TCAGCCATCA TTTATGATCG
  TTTACATAGT GACATAAAAC TTGATTTGAT ACTCAAAGCA ATTGGGTTGC TTTGAGTATG
  TTACTGTTTA GCTGTAGAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61031549	NES16092959	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49207641					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031549	NES16092959	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89845355 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67742	transcription start site region 67742	1808 bp downstream
Tssr67743	transcription start site region 67743	684 bp downstream
Tssr67744	transcription start site region 67744	133 bp downstream