rs49207669 SNP Detail

Summary

• ID
  rs49207669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:158798510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAACTATAT AAAGGCTATC AGTATAAAGA TTAAAGGCAT
  CATCAATAGG CTGAAACACC AAGAAGATGG CAAATACCTA TGCTAGCTGA GCAGAAAGTC
  Y
  AGGTGTATCC ATAACTACTT GTTGGTTTCC CCAAGGAATA TCCCACATGA CCCTTAGAAG
  TACCATCAGT AAAAATCAAA AGGGCATTAG CTAAGGGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145854658	ENSMUSSNP3590003	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49207669					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:158798510 () rs orientation: forward

Symbol	Name	Function Class
1600012P17Rik	RIKEN cDNA 1600012P17 gene	within coordinates
Tssr9608	transcription start site region 9608	1105 bp downstream
Tssr14505	transcription start site region 14505	1423 bp upstream
Tssr14506	transcription start site region 14506	1244 bp upstream
Tssr14507	transcription start site region 14507	1233 bp upstream
Tssr14508	transcription start site region 14508	1191 bp upstream