rs49208494 SNP Detail

Summary

• ID
  rs49208494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:75563505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTTATTC ACAGTGGGTT
  CTCGCACAGA GAACCGATTT CGGCTACCCA TTCAAGACCG AGGTCGTTAG CATTCCTAGG
  CCCTCGTCTC TCAGACCTGT GGCTGGTGGC ACGACCCCAA GAGGCCTCCG GCAAGTCAGA
  CCCCCGACTC CAGACGCCCC GCCCCCACCA GCTCCAAACA GCCTTAGCCC CCTTTTCAGG
  Y
  TCCCTTCGGC TGCGTGACCT GTGATTCAGA GAGTGAGACA ACCAACCCTT GCCCACCCAG
  ACCTCGTCGA ACTTCCCCGT CGACTTCCAT AGTTGCAGGG ACCCCTGAGA TACTGACCTA
  AGATCGTCAT CTCTCCGGCC ATCAGTCCCG CCGAACAGGC AGAAGGATGA CTGTACCGAT
  GGGAGGCACC GCCCCCTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60495643	NES16525076	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49208494					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60495643	NES16525076	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:75563505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8370	CpG island 8370	within coordinates
Hspa13	heat shock protein 70 family, member 13	within coordinates
Rr319131	regulatory region 319131	1305 bp distal
Rr325470	regulatory region 325470	within coordinates
Rr404916	regulatory region 404916	397 bp upstream
Rr404917	regulatory region 404917	1295 bp upstream
Tssr141799	transcription start site region 141799	141 bp downstream
Tssr141800	transcription start site region 141800	456 bp downstream