rs49209395 SNP Detail

Summary

• ID
  rs49209395
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:117012745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGCACCGAG AAACCTGAGC CTTACAAAGG TGATCACAGC
  CACTCGTGTT CCCCAGCAAA CACGCTCTAG CGCAGGGGAA GGCAGCCTCT CCCAGTCGTC
  G
  TCCCCCCGAC CCCCGCACGC ACCTTCGTGT TGGCAGCGGG CCGTCCCAGC TCATACTTTC
  GCTTCTTGTG GTAGGGTTTT CGCTTACCCC CGGTCTTGC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147285267	ENSMUSSNP12771	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49209395					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117012745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14653	CpG island 14653	within coordinates
Gm22980	predicted gene, 22980	1386 bp upstream
Gm26330	predicted gene, 26330	259 bp upstream
Rps8	ribosomal protein S8	within coordinates
Rr377051	regulatory region 377051	1036 bp downstream
Rr398411	regulatory region 398411	371 bp upstream
Rr598069	regulatory region 598069	685 bp proximal
Snord38a	small nucleolar RNA, C/D box 38A	974 bp upstream
Snord55	small nucleolar RNA, C/D box 55	223 bp downstream
Tssr38607	transcription start site region 38607	1710 bp downstream
Tssr42956	transcription start site region 42956	296 bp downstream
Tssr42957	transcription start site region 42957	527 bp downstream
Tssr42958	transcription start site region 42958	574 bp downstream
Tssr42959	transcription start site region 42959	596 bp downstream
Tssr42960	transcription start site region 42960	637 bp downstream
Tssr42961	transcription start site region 42961	651 bp downstream