rs49209615 SNP Detail

Summary

• ID
  rs49209615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:121745445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTGCGGT GCCTGAGCAG
  CAAGGACAGA CACAGGCATC CCACAACCGT GAGCAGGGCT CCTAGCACTG TACACCACAG
  CGTCATGGCT AGGCTCCAGC AGGCTGAGCT CCACTTGTCA GCTCTACAGC GCTGGAATTG
  CTTTATGTGG CCTTTATAAG TTGGCAATGC AAAGGTTCCT GCCCTTGGAC TTTGCTCAGA
  R
  GCTCGGACGT GGTAAATAAC TCTAGTTAGC TGGCACAGGG AGGAAAAATG TTATTCTAAT
  TTAATACATG ACACAGCAGA GTTTGGCCAG GTAAAAGGAG GAAAGGCTGA CTAGAGAGAC
  GATGAAAGAA AAGAAAAGCC ACAGGTTGTG TGCCAGCTGT GCACTTTGCT ACTGTTCAGG
  TTCAGCTCTG GTGTGTTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61238803	NES16858687	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49209615					SNP	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61238803	NES16858687	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:121745445 () rs orientation: forward

Symbol	Name	Function Class
Cyp8b1	cytochrome P450, family 8, subfamily b, polypeptide 1	74 bp upstream
Tssr92081	transcription start site region 92081	1678 bp upstream
Tssr92082	transcription start site region 92082	1515 bp upstream
Tssr92083	transcription start site region 92083	1195 bp upstream
Tssr92084	transcription start site region 92084	64 bp upstream