rs49210404 SNP Detail

Summary

• ID
  rs49210404
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99142787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTTTGC CTGTTCTTGG
  ACTTTGAGGA TGGCACCTTC AGAAGCAAGC AAAGAGACTT CTGAGGTAGC CCAAGCTTGT
  CTGAACTCAC AGTGAGCAAG ACGATTTCCA GGAATGATCC ATGAAGTTTC TAAACATCAA
  AATCCAGTAC AGAACATTAA GATATAGGTT TTGAAATGTG AACAAATAAA ACGATTAATT
  W
  AAAAAAAAAG CTATAGACTT ATAAGCACCA ACAGTGGCTC CTTCCACTTG TGCTTGTTCA
  GCTGGCAAGA TCTGGGGGTA GGTAGGTAGG TAGATCAGCT GAGCCCCTCC TGTCAATGCA
  CAAAAGGATG ACTCTGGTAT TAAATTGTGG TGAAAAGATG AACTTAGAAA GTTACTGTTT
  CTCTATGTTG GTGGAATTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61445180	NES16826087	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T		T	A	A		T
ss323135195	CHEV_9_99161153	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs49210404					SNP	T	T	T	T	T	T	A	T	T	T	T	T	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61445180	NES16826087	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99142787 () rs orientation: forward

Symbol	Name	Function Class
Cep70	centrosomal protein 70	within coordinates
Gm18914	predicted gene, 18914	211 bp downstream
Gm47199	predicted gene, 47199	527 bp upstream