rs49210853 SNP Detail

Summary

• ID
  rs49210853
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165506991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGGTGGCTC AGAGATCGAG GGCAAACTGC TCTTGCAGAG
  AACCTGGGGT TCAGATCCCA GCACCCACAT GGGTGGCTCC CAAACCTCTA TAACTCTAGC
  K
  CCGACGAATT CGACGCCCTC TTCTGGACTC TGGGGGTACT GCATGCACAG GGTGCACAGA
  TAAACAAGCA AAACACTCAT ACACATAGGA AAAAAAATA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146004965	ENSMUSSNP6354609	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49210853					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165506991 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr13801	regulatory region 13801	within coordinates
Rr13802	regulatory region 13802	1610 bp proximal
Tssr14776	transcription start site region 14776	579 bp upstream
Tssr14777	transcription start site region 14777	482 bp upstream