rs49212202 SNP Detail

Summary

• ID
  rs49212202
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46039356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTATCCCT TCCTCTTCTC
  CTAAGGGGAA GCCCCCCTTG TATACGGCCC TGCCCTGGGA CACCAAGTAG AAGCAGGAAT
  GTGTGTGTCC TCTCCCATTG AGGTGCAACC TGGCAGTTCA GCTAGAGGAA GGGGAGGGTT
  CCAATGGCAG GCAGCTCAGT CAGAGATAGC CCTGACATAG TTGTTAGGGG AGCCACATGA
  C
  GACAAAGCTG CACGTCTGCT ATAAATGTGT AGGGCACCTA TGCTGGCCCA TGCATGTTCT
  TTGTTAGTGG TTCAGTCTCT GTTAGCTTCC ATGGGCTCAG GTTAGTTGAC TCTGTAGGTC
  TTCTTGTGGT GTCCTTGACT GCTCCCGCAC ACTCAATCCT ATCCCGCACT CTTCCACAGA
  ACTCCCAAAG CTCTGCCTGA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136423334	ENSMUSSNP1503895	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49212202					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46039356 () rs orientation: forward

Symbol	Name	Function Class
Rr678056	regulatory region 678056	1332 bp distal
Rr678057	regulatory region 678057	374 bp distal
Sik3	SIK family kinase 3	within coordinates
Tssr84829	transcription start site region 84829	821 bp downstream