rs49212688 SNP Detail

Summary

• ID
  rs49212688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:55067192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGTAGAGA GAGAGAGAGA TTAAATTACA CAAAATAGAA
  TTTAGCCAAA GGAACACTGC CTCCAAGACA CCCAAAAAAT AAACAGTATG CTAGCCAGGC
  Y
  TGTTAGAAAT AAAGTTTATG ATGCCTAAGA TGTTAATGTT GGTTCACCAG TATTGACCAG
  CCATTAGATA CGGTAGAATA CTTCTCTTAA CAGGCAGCTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60734990	NES16375784	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49212688					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60734990	NES16375784	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:55067192 () rs orientation: forward

Symbol	Name	Function Class
Cpgi259	CpG island 259	288 bp distal
Gm71172	predicted gene, 71172	within coordinates
Rr371303	regulatory region 371303	within coordinates
Sf3b1	splicing factor 3b, subunit 1	552 bp upstream
Tssr6707	transcription start site region 6707	1657 bp downstream
Tssr6708	transcription start site region 6708	433 bp downstream
Tssr11708	transcription start site region 11708	627 bp upstream
Tssr11709	transcription start site region 11709	549 bp upstream