rs49213182 SNP Detail

Summary

• ID
  rs49213182
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:65072214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTATAAA TAAGACCGTA
  GTAGGAGGTA GGACCTTTGC AGGTGTTATT AAACTAAAGA TTTATAGAGG ATGCCACCTC
  AGAGTTCCTG AACAGGCCCC AAGTTTACTG CCAAATGTCC TGATGAGACA GATAAGAGGA
  CACAGAGACC AGGTGGTATG TGACTGTGAT GGCATCAAAC GGTGGACGCA GCCACTGTTG
  W
  GATCTTGGCT GCAAGTTAGG GGACGCCAAA CTGAAGCCAT AGAGCAAAAG AACAGTGCTG
  ACACTATTGG GATCAGAGCA GGATGGATCA AGTTTCTGGT GTGTTAAGCT AACTAGTTGG
  TGGCCCTTCG GGACAACGGA ATTTTAATCT TTCGTTCTGA TTGCCTCCTG GGGGCAGACT
  CTGTACACCC TGTAACCCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss62845454	NES17373248	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49213182					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62845454	NES17373248	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:65072214 () rs orientation: forward

Symbol	Name	Function Class
Dreh	down-regulated in hepatocellular carcinoma	1892 bp upstream
Rr392835	regulatory region 392835	263 bp downstream
Rr529706	regulatory region 529706	within coordinates