rs49213622 SNP Detail

Summary

• ID
  rs49213622
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47447807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGC CCCAACACTA GGCCAGCACC
  C
  CCTCCAGGTC TGGACAGCTG TCCTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146465798	ENSMUSSNP7108892	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49213622					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47447807 () rs orientation: forward

Symbol	Name	Function Class
Gm52384	predicted gene, 52384	within coordinates
Rr549060	regulatory region 549060	132 bp distal
Rr549061	regulatory region 549061	821 bp proximal
Rr549062	regulatory region 549062	1465 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	1240 bp downstream
Tssr159730	transcription start site region 159730	1390 bp downstream