rs49215068 SNP Detail

Summary

• ID
  rs49215068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14620785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCATCTTC CCATAAATTA
  GCAAGAATCA CTTCTCCAAG ACAAAAATCT AGCCTGGACC CTAATTTGGT TATATAATGC
  TGAATGGTCA CCATGGCATA TACCGGGGGG GGGGGGGGGG CAGATACAAG GAGGGAGATA
  TTTTGCCTTC TGGGAAACCA CATGGTATAG ATCCAGTTAG GATGACTTCA AAAGGGTATC
  Y
  GGGCTCAACA TGTTCCTCTG AGTGGGGTGG CTGTCTGCAC AGGACAGAGG GCTGTTGGGA
  ATCATGAACT CAGAAATGGG TTCGGAGGCA GAGCATTGCA GGTGTTGAGC TGTAAGGAGG
  GGATGTTCAT GGGATGTCAG GAGACGACTA AGCAACTCTG GAATCAGCTA CCCGGTCCTG
  GAAAGGAGTG GGCAGGAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60541456	NES16554285	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49215068					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60541456	NES16554285	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14620785 () rs orientation: forward

Symbol	Name	Function Class
4930474M22Rik	RIKEN cDNA 4930474M22 gene	1581 bp upstream
Rr522524	regulatory region 522524	1550 bp distal
Rr522525	regulatory region 522525	507 bp proximal
Smoc2	SPARC related modular calcium binding 2	within coordinates
Tssr5014	transcription start site region 5014	1571 bp upstream
Tssr142738	transcription start site region 142738	1487 bp downstream
Tssr142739	transcription start site region 142739	1277 bp downstream
Tssr142740	transcription start site region 142740	1251 bp downstream
Tssr146495	transcription start site region 146495	1582 bp upstream