rs49215582 SNP Detail

Summary

• ID
  rs49215582
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41444298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG CACCTCTGCT GGCTGAACTC
  G
  TGCTTGACGC AGGGAGGGGC ATCAT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136357166	ENSMUSSNP4199515	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322926789	CHEV_9_41341085	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49215582					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41444298 () rs orientation: forward

Symbol	Name	Function Class
Gm48742	predicted gene, 48742	915 bp upstream
Mir100	microRNA 100	1498 bp downstream
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677056	regulatory region 677056	359 bp distal
Rr677057	regulatory region 677057	within coordinates
Tssr84510	transcription start site region 84510	1503 bp downstream
Tssr84511	transcription start site region 84511	981 bp downstream