rs49216832 SNP Detail

Summary

• ID
  rs49216832
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45923693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTCTAA TTTCCGCACT
  CTTCTGTGTT CGATGACTTA TTAGATTGAT TGTACGAAGT GAGCTGGGCT TTGTAAGAGT
  TTTTGCTGAA CAATTCCCCT GCCTTGCTAC CAACTTGGTT ACAGTTGCTT AAATACTGTA
  GCTATTCCTG CCTCTGTGGC CTCCAGGGCT AAAGTGGGAC AAGGCTGGTA TTTTTGGTGA
  T
  GAGGAAATCC TTTTAAGGGA GGTTTGGTGA TGACTGAACT GGGACACAGG TCGGAGCAGG
  GATCCCATCA GCGAACCAGG GGCCATCGGG AGTCTGGTTC TGGGGTCTCC CCATCTCATA
  TCCCTACCTC GCTAGGCGCG GCGGAAGCTT AGAAGTTGCT GCTGACCCTC GACGTTTTCA
  ATGCCTGTTC CCCAGAGGGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss136421738	ENSMUSSNP1295721	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs49216832					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45923693 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21700	CpG island 21700	within coordinates
Pafah1b2	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	within coordinates
Rr401349	regulatory region 401349	107 bp upstream
Rr678026	regulatory region 678026	1066 bp distal
Rr678027	regulatory region 678027	within coordinates
Rr678028	regulatory region 678028	364 bp proximal
Sik3	SIK family kinase 3	425 bp upstream
Tssr84822	transcription start site region 84822	415 bp upstream
Tssr84823	transcription start site region 84823	427 bp upstream
Tssr89308	transcription start site region 89308	216 bp downstream