rs49216852 SNP Detail

Summary

• ID
  rs49216852
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:8544526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTGGCA TTGCTTTGCT
  CGGGTCCAGC TCAGTTGGTG ACGCGGCCCC TTCTCCCCAG GTTCCCATCC ACGGAAGCAG
  GGGTGCAGGC CGGCCAGGCA CTGTGCCATG AGCCAGAGCC CGAGGTTCGT GACCCGGAGG
  GGCGGCTCTC TAAAGGCTGC CCCTGGAGCC GGCACCCGGC GCAACGAGAG CCAGGACTAT
  Y
  TGCTGATGGA CGAGCTGGGA GACGACGGCT ACCCGCAGCT CCCGCTGCCA CCGTATGGCT
  ACTACCCCAG CTTGTAAGTA TGGGCGAGGG CAGCACGGGT TGCAGGAGTG GGTCCCGTGC
  GCGCCTCAAC AGCCATGTGT CTCCAGACTT CCAGACAAGC GAGGGGTGCT AGCGCAGATG
  GGACGAGGCT GGCTGCTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60683961	NES16235411	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49216852					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60683961	NES16235411	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:8544526 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21347	CpG island 21347	within coordinates
Rr206822	regulatory region 206822	within coordinates
Rr211022	regulatory region 211022	1675 bp proximal
Trpc6	transient receptor potential cation channel, subfamily C, member 6	within coordinates
Tssr83785	transcription start site region 83785	300 bp downstream
Tssr83786	transcription start site region 83786	267 bp downstream
Tssr83787	transcription start site region 83787	within coordinates