rs49218044 SNP Detail

Summary

• ID
  rs49218044
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17691999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACAAAAGTG CCCGGCAAAA TACTATATGC CATCTACATA
  TCATTTTTAG ATAGATGATG ATGAGGTGGT GGTAGTAAAA TTGGTGGTAG GAACCCACAA
  M
  ATAGTTCCCT CTAGGTAACA ATCAGGCTGT AACTAGAGGC CATTGCTGGG AGAAACACAG
  AGGTGATCTG AATCTTGATG TCTTAAGGCC CAGTATAGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133020634	ENSMUSSNP3111056	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss321756042	CHEV_6_17642000	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49218044					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17691999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1675 bp proximal
Gm55211	predicted gene, 55211	1426 bp upstream
Gm55212	predicted gene, 55212	1937 bp upstream
Rr626833	regulatory region 626833	203 bp proximal
Rr626834	regulatory region 626834	1577 bp proximal
St7	suppression of tumorigenicity 7	1580 bp upstream
Tssr55085	transcription start site region 55085	1607 bp upstream
Tssr55086	transcription start site region 55086	1905 bp upstream
Tssr55087	transcription start site region 55087	1965 bp upstream