rs49218948 SNP Detail

Summary

• ID
  rs49218948
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:7504827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAACTAG ATTTAGCTTC
  TAGGAAGAGC AAATTTATAG GAAGAGTTTA TTCACAAGAT CACACTACCT ATAATGACTC
  GAAGTATCTT CATTGCCCTT TACATTATGT GTATTCAGAT GTACTTTCTA TGAGGAAAAT
  AAAATGCTCT GGAAATTATG CACACTGAAA ATCAGGCATT TCTTACCTGT CTTAAACACA
  W
  ATATAAATTC AACTCTTTTA AAGGGCTTAG ACCTCATTAA CACCATTCTT CTATCTCTAC
  CCACTTAGTG CTGCTGTTCA AACTGGCTGT TCATTCAACA TCCTAAAGTT TCACCTCCTA
  AAAGTGTCAA GTCTAAGAGC AAGGCTTGGG CACAGAGTTT CTGTACAAAC TGGGTGAAGT
  GTATGGTGCC TATTTATAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss52134655	NES15245538	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs49218948					SNP	T	T	T	T	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52134655	NES15245538	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:7504827 () rs orientation: forward

Symbol	Name	Function Class
Pcmt1	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	310 bp downstream
Rr220299	regulatory region 220299	within coordinates
Rr220302	regulatory region 220302	974 bp proximal
Tssr92302	transcription start site region 92302	258 bp upstream