rs49219239 SNP Detail

Summary

• ID
  rs49219239
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:149209908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAAGATT AGCAGTTCTC
  AGAAAAATAA CAGTTCTCGG AAAAAGTCTC CTGCCCCACC TCGCACTAAA TTCCGAGAAA
  AAACACAAAC TGACCTTCTT GCCAGAATTC CCTGAAACAT TAGTAGCTGA CCAATGAGTT
  TTAAAATATA CTGCTGCTTT GCTGACCCAT CATAATATGG CTGTCCAACC CTCCACAAAA
  W
  GTATAAAGGA ACTATGCTTT CTGAGCTCTG GGGTTGACCC TCCCTGCGAC GTGTCAGAAC
  AATAAACCTC TTGCCATTGC AGCGATCTGT TGTCAAGTTG TGTTTTTGGG CTTGCGCACC
  CAGGGTAAAG CCTCGGAGGT CTTACACCTC CATTCCTTAC CTAGGACCAA TCAGCTTAAA
  AGTTAGCTGA TAATACTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NZW/LacJ
ss60961300	NES16169810	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	NZW/LacJ
rs49219239					SNP	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60961300	NES16169810	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:149209908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18192	CpG island 18192	891 bp proximal
Gm56997	predicted gene, 56997	435 bp downstream
Resf1	retroelement silencing factor 1	1004 bp upstream
Rr380294	regulatory region 380294	within coordinates
Rr641718	regulatory region 641718	167 bp distal
Rr641719	regulatory region 641719	528 bp proximal
Rr641720	regulatory region 641720	911 bp proximal
Rr641721	regulatory region 641721	960 bp proximal
Rr641722	regulatory region 641722	1075 bp proximal
Rr641723	regulatory region 641723	1255 bp proximal
Tssr59650	transcription start site region 59650	903 bp upstream
Tssr59651	transcription start site region 59651	981 bp upstream
Tssr59652	transcription start site region 59652	1034 bp upstream
Tssr59653	transcription start site region 59653	1135 bp upstream
Tssr59654	transcription start site region 59654	1323 bp upstream
Tssr59655	transcription start site region 59655	1372 bp upstream
Tssr59656	transcription start site region 59656	1918 bp upstream
Tssr64178	transcription start site region 64178	613 bp upstream
Tssr64179	transcription start site region 64179	1223 bp downstream
Tssr64180	transcription start site region 64180	1246 bp downstream