rs49219255 SNP Detail

Summary

• ID
  rs49219255
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134289650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAG CCTGGCACGG CAGTGTAGGG
  A
  CCTGGACTCC TCGCCATGTA GATGG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147535304	ENSMUSSNP6229655	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321348744	CHEV_4_134118254	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49219255					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134289650 () rs orientation: forward

Symbol	Name	Function Class
Man1c1	mannosidase, alpha, class 1C, member 1	within coordinates
Tssr43917	transcription start site region 43917	985 bp downstream
Tssr43918	transcription start site region 43918	1000 bp downstream
Tssr43919	transcription start site region 43919	1028 bp downstream
Tssr43920	transcription start site region 43920	1096 bp downstream
Tssr43921	transcription start site region 43921	1104 bp downstream
Tssr43922	transcription start site region 43922	1138 bp downstream