rs49220326 SNP Detail

Summary

• ID
  rs49220326
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54414159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTTTGAT GAATTGTACT
  AATGCTGCAA TCAGTGTTTC TCTCGAAGGT CCACAAAGCA CGTTGTGGCT TTGGGGGAAA
  GGCAGAGATA AGAAGAAAAG CTTTTCGATA GAGACAGAAA CAAAGGAACG GAAAGAAAGG
  TTGCCGAGGC AGCAGTGCGT AGCCAAGGAA GCGTGTCCTC GGCAGATAAG TGAGAAGGAT
  Y
  CAATCGGGTT TGTGCCGTGA CATCTAGGCA GAACTGAAAA GTAAGGCGAG TGGGCTGAGG
  ATGGGGCGGG GGAGCACAGA GGACAGCCAG ACTCCCAGGC GTCCTCATTC TGTTCAAGTG
  GCCAAACCAT GGAACCTTCT CTAGACAGAG GACAGCCCCA GCTTTGTCAC ATTGATGAGC
  TAGTCCTTGA GCACTGCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62393419	NES17236648	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49220326					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393419	NES17236648	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54414159 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492148	regulatory region 492148	within coordinates
Tcra	T cell receptor alpha chain	within coordinates
Traj40	T cell receptor alpha joining 40	1219 bp upstream
Traj41	T cell receptor alpha joining 41	377 bp downstream
Traj42	T cell receptor alpha joining 42	866 bp downstream
Traj43	T cell receptor alpha joining 43	1904 bp downstream
Tssr125564	transcription start site region 125564	1823 bp downstream
Tssr125565	transcription start site region 125565	1734 bp downstream
Tssr125566	transcription start site region 125566	720 bp downstream
Tssr125567	transcription start site region 125567	483 bp downstream
Tssr125568	transcription start site region 125568	466 bp downstream
Tssr125569	transcription start site region 125569	446 bp downstream
Tssr125570	transcription start site region 125570	417 bp downstream
Tssr128543	transcription start site region 128543	40 bp upstream