rs49220378 SNP Detail

Summary

• ID
  rs49220378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:52747348 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACTCTGAA GAGAGGGAAC
  GCGTAAGCCT ATACCCTTAG CACCCAGCTA ACAGCTGCTG CAGACTGTCG TTCCTGATTC
  CCTGAGAGTG AGTTGTCTGT CCAATCCAAC CCAGATACAG AATTGACCTA TTTCAGTTCT
  GGTGCCTTAA CTTCCCCTTT CCTGTCATCC TGTCATCTGG GCCAAACAGC CAGCTATTGA
  R
  CTGAGTACTT GTGTGTATTT AGAAACGTGA GCACTTATTT ATTATGCAAT TTCTTTAGAG
  ATAGCTTTTA GCTCACAATA GGGCAACATA CATAGTGCAT TGTAATGTGA GGAACATGTT
  AGCTAGAGAC CGGCAAATTG GCCAAAAGCC AAATGTAAAG GCTATGTGTT CTTGCTTCAA
  CAGCGAGTCA CTGCCACCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63131457	NES17435836	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49220378					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63131457	NES17435836	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:52747348 () rs orientation: forward

Symbol	Name	Function Class
Rr354446	regulatory region 354446	within coordinates
Tssr151055	transcription start site region 151055	1632 bp upstream
Tssr151056	transcription start site region 151056	1748 bp upstream
Zfp474	zinc finger protein 474	1639 bp upstream